New PDF release: Bioinformatics: Methods and Protocols

By Stephen Misener, Stephen A. Krawetz

Hands-on clients and specialists survey the foremost organic software program programs, delivering helpful suggestions and an outline of present advancements. one of the series research platforms reviewed are GCG, Omiga, MacVector, DNASTAR, PepTool™, GeneTool™, and the Staden package deal. Molecular biology software program contains Genotator and sequence-similarity looking out utilizing FASTA, CLUSTAL a number of series alignment, and phylogenetic research. Web-based assets are tested for fundamental series databases, fundamental series research equipment, and medical databases beneficial in molecular drugs. quite a few illustrative examples to educate the reader tips on how to resolve difficulties are incorporated. Bioinformatics: tools and Protocols constitutes a gold-standard reference for contemporary scientists who desire to strengthen and hone their bioinformatics abilities in the direction of the invention of latest organic relationships.

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Extra resources for Bioinformatics: Methods and Protocols

Example text

A. 5 CD. Being a commercial program, MacVector is copy protected. The copy protection can either be via hardware or software. The hardware copy-protection device is called the EvE key, which connects to the Macintosh’s Apple Desktop Bus (ADB). The device can be daisy chained to the computer’s keyboard or mouse. The computer must be switched off before connecting or disconnecting the EvE key to the ADB. The software copy-protection solution is KeyServer™ from Sassafras Software™ (Hanover, NH). KeyServer is used to copy protect multiple copies within the same software license, and is installed on one machine in the network.

PBR322 restriction map. The user has customized the appearance of the features in this map. the color, pattern, and style of individual features and results, as well as the font and style of text used in the maps for features and results labels and the title. The user can also decide which features and/or results will be displayed in the maps (Fig. 2). The Options|Default Symbols command allows the user to set global symbols for Features Maps and Results Maps. This menu option is available only if a sequence window or results window is not active on the desktop; if a Hoang-Dung TRAN and friends 52 Rastogi Fig.

A discussion about the GCG programs themselves is included in Chapter 1. From: Methods in Molecular Biology, vol. 132: Bioinformatics Methods and Protocols Edited by: S. Misener and S. A. , Totowa, NJ 23 Hoang-Dung TRAN and friends 24 Womble 2. 1, installed on a shared computer with a UNIX operating system connected to a TCP/IP network. 6. A minimum of 15 gigabytes of hard disk space is needed to install and maintain the Wisconsin Package with its entire set of databases. The disk space requirement is increasing rapidly with the expansion of the databases.

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