Download e-book for iPad: Bioinformatics for Diagnosis, Prognosis and Treatment of by Feng Guo (auth.), Bairong Shen (eds.)

By Feng Guo (auth.), Bairong Shen (eds.)

The ebook introduces the bioinformatics instruments, databases and methods for the translational study, makes a speciality of the biomarker discovery in keeping with integrative facts research and structures organic community reconstruction. With the arriving of non-public genomics period, the biomedical information might be accrued speedy after which it is going to develop into fact for the customised and actual analysis, diagnosis and therapy of advanced illnesses. The booklet covers either state-of-the-art of bioinformatics methodologies and the examples for the id of straightforward or community biomarkers. moreover, bioinformatics software program instruments and scripts are supplied to the sensible software within the examine of advanced ailments. the current nation, the long run demanding situations and views have been mentioned. The booklet is written for biologists, biomedical informatics scientists and clinicians, and so forth. Dr. Bairong Shen is Professor and Director of middle for platforms Biology, Soochow college; he's additionally Director of Taicang heart for Translational Bioinformatics.

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Example text

The advent of cancer subtypes has explained some of the heterogeneity; however, it is at best a compromise. Tumor heterogeneity contributes to the long-tail distribution of the frequency cancer mutations. e. less frequently mutated genes) (Ding et al. 2010). This implies that there will be many rare, yet undiscovered driver mutations that are obscured by tumor heterogeneity. Another challenge in driver mutation identification is determining what constitutes a mutation. Not all mutations are created equal, some mutations display greater functional impact on a gene in terms of its protein structure and will be more damaging (Kumar et al.

Time-course gene expression, that can describe the activities of individual molecules, the molecular networks are able to characterize the dynamics of the biological systems. In addition, many diseases, especially complex diseases, are caused due to the dysfunction of multiple genes, where these genes have been found to tend to interact with each other compared with non-disease genes (Chen et al. 2013b; Goh et al. 2007). Therefore, a lot of computation approaches have been developed to identify subnetworks or modules from the molecular networks, and these subnetworks or modules have discriminative ability of separating different conditions and can therefore serve as biomarkers.

Among different biomarkers, the gene biomarkers are easy to interpret and can help design targeted therapy, while the gene set/pathway/network biomarkers are more biological reasonable and have better performance since diseases are rarely caused due to the aberrant variation of single genes. Although gene set/pathway/network biomarkers generally perform better than gene biomarkers, it depends on the problem of interest to choose which type of biomarkers one should identify since pathway/ network biomarkers may not perform better than gene biomarkers in some cases (Staiger et al.

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