Anatomy Ontologies for Bioinformatics: Principles and - download pdf or read online

By Albert Burger, Duncan Davidson, Richard Baldock

This publication presents a well timed and first-of-its-kind choice of papers on anatomy ontologies. it's interdisciplinary in its procedure, bringing jointly the appropriate services from computing and biomedical experiences. The e-book goals to supply readers with a complete realizing of the rules of anatomical ontologies and the-state-of-the-art when it comes to latest instruments and purposes. It additionally highlights demanding situations that stay at the present time.

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Anatomy Ontologies for Bioinformatics: Principles and by Albert Burger, Duncan Davidson, Richard Baldock PDF

This publication offers a well timed and first-of-its-kind number of papers on anatomy ontologies. it truly is interdisciplinary in its technique, bringing jointly the correct services from computing and biomedical experiences. The publication goals to supply readers with a entire figuring out of the principles of anatomical ontologies and the-state-of-the-art when it comes to latest instruments and purposes.

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Yap, D. Ware, W. Spooner, K. Youens-Clark, L. Ren, C. Liang, W. Zhao, K. Ratnapu, B. Faga, P. Canaran, M. Fogleman, C. Hebbard, S. Avraham, S. Schmidt, T. M. S. Buckler, L. Stein, and S. McCouch. Gramene: a bird’s eye view of cereal genomes. Nucleic Acids Res, 34:D717–23, 2006. 16. J. Lawrence, Q. L. E. Seigfried, and V. Brendel. MaizeGDB, the community database for maize genetics and genomics. Nucleic Acids Res, 32:D393–397, 2004. 17. C. Mungall. Obol: Integrating language and meaning in bio-ontologies.

Currently, PSO also has 304 synonyms assigned to 149 terms. , from the root node to the leaf node in the path) is 15 nodes, while an average ontology depth is 5 nodes. More detailed analysis of the ontology structure is provided elsewhere [13]. org) and displaying ontologies and annotations (ontology browsing tool, AmiGO). shtml#in house). The browser has been slightly modified to suit specific requirements of the PO and its association files. Some browse and search functionalities of the PO AmiGO are displayed in Fig.

Representation of normal and abnormal anatomy and the relationships between various abnormalities is a major unmet challenge. • Synonyms and variant terminology. Issues of terminology and synonyms is as prevalent in anatomy as in any other biological field. Differences occur over time and between different academic communities and between different geographical locales.

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